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This skill guides you through root-cause investigation before fixes, ensuring you diagnose cause and collect evidence prior to solving any bug.

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---
name: systematic-debugging
description: Four-phase debugging framework that ensures root cause investigation before attempting fixes. Never jump to solutions. Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes.
version: 2.1.0
---

# Systematic Debugging

## Overview

Random fixes waste time and create new bugs. Quick patches mask underlying issues.

**Core principle:** ALWAYS find root cause before attempting fixes. Symptom fixes are failure.

**Violating the letter of this process is violating the spirit of debugging.**

## The Iron Law

```
NO FIXES WITHOUT ROOT CAUSE INVESTIGATION FIRST
```

If you haven't completed Phase 1, you cannot propose fixes.

## When to Use

Use for ANY technical issue:
- Test failures
- Bugs in production
- Unexpected behavior
- Performance problems
- Build failures
- Integration issues

**Use this ESPECIALLY when:**
- Under time pressure (emergencies make guessing tempting)
- "Just one quick fix" seems obvious
- You've already tried multiple fixes
- Previous fix didn't work
- You don't fully understand the issue

**Don't skip when:**
- Issue seems simple (simple bugs have root causes too)
- You're in a hurry (rushing guarantees rework)
- Manager wants it fixed NOW (systematic is faster than thrashing)

## The Four Phases

You MUST complete each phase before proceeding to the next.

### Phase 1: Root Cause Investigation

**BEFORE attempting ANY fix:**

1. **Read Error Messages Carefully**
   - Don't skip past errors or warnings
   - They often contain the exact solution
   - Read stack traces completely
   - Note line numbers, file paths, error codes

2. **Reproduce Consistently**
   - Can you trigger it reliably?
   - What are the exact steps?
   - Does it happen every time?
   - If not reproducible → gather more data, don't guess

3. **Check Recent Changes**
   - What changed that could cause this?
   - Git diff, recent commits
   - New dependencies, config changes
   - Environmental differences

4. **Gather Evidence in Multi-Component Systems**

   **WHEN system has multiple components (CI → build → signing, API → service → database):**

   **BEFORE proposing fixes, add diagnostic instrumentation:**
   ```
   For EACH component boundary:
     - Log what data enters component
     - Log what data exits component
     - Verify environment/config propagation
     - Check state at each layer

   Run once to gather evidence showing WHERE it breaks
   THEN analyze evidence to identify failing component
   THEN investigate that specific component
   ```

   **Example (multi-layer system):**
   ```bash
   # Layer 1: Workflow
   echo "=== Secrets available in workflow: ==="
   echo "IDENTITY: ${IDENTITY:+SET}${IDENTITY:-UNSET}"

   # Layer 2: Build script
   echo "=== Env vars in build script: ==="
   env | grep IDENTITY || echo "IDENTITY not in environment"

   # Layer 3: Signing script
   echo "=== Keychain state: ==="
   security list-keychains
   security find-identity -v

   # Layer 4: Actual signing
   codesign --sign "$IDENTITY" --verbose=4 "$APP"
   ```

   **This reveals:** Which layer fails (secrets → workflow ✓, workflow → build ✗)

5. **Trace Data Flow**

   **WHEN error is deep in call stack:**

   See root-cause-tracing skill for backward tracing technique

   **Quick version:**
   - Where does bad value originate?
   - What called this with bad value?
   - Keep tracing up until you find the source
   - Fix at source, not at symptom

### Phase 2: Pattern Analysis

**Find the pattern before fixing:**

1. **Find Working Examples**
   - Locate similar working code in same codebase
   - What works that's similar to what's broken?

2. **Compare Against References**
   - If implementing pattern, read reference implementation COMPLETELY
   - Don't skim - read every line
   - Understand the pattern fully before applying

3. **Identify Differences**
   - What's different between working and broken?
   - List every difference, however small
   - Don't assume "that can't matter"

4. **Understand Dependencies**
   - What other components does this need?
   - What settings, config, environment?
   - What assumptions does it make?

### Phase 3: Hypothesis and Testing

**Scientific method:**

1. **Form Single Hypothesis**
   - State clearly: "I think X is the root cause because Y"
   - Write it down
   - Be specific, not vague

2. **Test Minimally**
   - Make the SMALLEST possible change to test hypothesis
   - One variable at a time
   - Don't fix multiple things at once

3. **Verify Before Continuing**
   - Did it work? Yes → Phase 4
   - Didn't work? Form NEW hypothesis
   - DON'T add more fixes on top

4. **When You Don't Know**
   - Say "I don't understand X"
   - Don't pretend to know
   - Ask for help
   - Research more

### Phase 4: Implementation

**Fix the root cause, not the symptom:**

1. **Create Failing Test Case**
   - Simplest possible reproduction
   - Automated test if possible
   - One-off test script if no framework
   - MUST have before fixing

   ```bash
   # Create test with bun (preferred)
   bun test my-fix.test.ts

   # Or with npm
   npm test -- my-fix.test.ts
   ```

2. **Implement Single Fix**
   - Address the root cause identified
   - ONE change at a time
   - No "while I'm here" improvements
   - No bundled refactoring

3. **Verify Fix**
   - Test passes now?
   - No other tests broken?
   - Issue actually resolved?

   ```bash
   # Run full test suite
   bun test  # or: npm test

   # Run specific test
   bun test --grep "my fix"
   ```

4. **If Fix Doesn't Work**
   - STOP
   - Count: How many fixes have you tried?
   - If < 3: Return to Phase 1, re-analyze with new information
   - **If ≥ 3: STOP and question the architecture (step 5 below)**
   - DON'T attempt Fix #4 without architectural discussion

5. **If 3+ Fixes Failed: Question Architecture**

   **Pattern indicating architectural problem:**
   - Each fix reveals new shared state/coupling/problem in different place
   - Fixes require "massive refactoring" to implement
   - Each fix creates new symptoms elsewhere

   **STOP and question fundamentals:**
   - Is this pattern fundamentally sound?
   - Are we "sticking with it through sheer inertia"?
   - Should we refactor architecture vs. continue fixing symptoms?

   **Discuss with your human partner before attempting more fixes**

   This is NOT a failed hypothesis - this is a wrong architecture.

## Red Flags - STOP and Follow Process

If you catch yourself thinking:
- "Quick fix for now, investigate later"
- "Just try changing X and see if it works"
- "Add multiple changes, run tests"
- "Skip the test, I'll manually verify"
- "It's probably X, let me fix that"
- "I don't fully understand but this might work"
- "Pattern says X but I'll adapt it differently"
- "Here are the main problems: [lists fixes without investigation]"
- Proposing solutions before tracing data flow
- **"One more fix attempt" (when already tried 2+)**
- **Each fix reveals new problem in different place**

**ALL of these mean: STOP. Return to Phase 1.**

**If 3+ fixes failed:** Question the architecture (see Phase 4.5)

## Common Rationalizations

| Excuse | Reality |
|--------|---------|
| "Issue is simple, don't need process" | Simple issues have root causes too. Process is fast for simple bugs. |
| "Emergency, no time for process" | Systematic debugging is FASTER than guess-and-check thrashing. |
| "Just try this first, then investigate" | First fix sets the pattern. Do it right from the start. |
| "I'll write test after confirming fix works" | Untested fixes don't stick. Test first proves it. |
| "Multiple fixes at once saves time" | Can't isolate what worked. Causes new bugs. |
| "Reference too long, I'll adapt the pattern" | Partial understanding guarantees bugs. Read it completely. |
| "I see the problem, let me fix it" | Seeing symptoms ≠ understanding root cause. |
| "One more fix attempt" (after 2+ failures) | 3+ failures = architectural problem. Question pattern, don't fix again. |

## Quick Reference

| Phase | Key Activities | Success Criteria |
|-------|---------------|------------------|
| **1. Root Cause** | Read errors, reproduce, check changes, gather evidence | Understand WHAT and WHY |
| **2. Pattern** | Find working examples, compare | Identify differences |
| **3. Hypothesis** | Form theory, test minimally | Confirmed or new hypothesis |
| **4. Implementation** | Create test, fix, verify | Bug resolved, tests pass |

## When Process Reveals "No Root Cause"

If systematic investigation reveals issue is truly environmental, timing-dependent, or external:

1. You've completed the process
2. Document what you investigated
3. Implement appropriate handling (retry, timeout, error message)
4. Add monitoring/logging for future investigation

**But:** 95% of "no root cause" cases are incomplete investigation.

## Integration with Other Skills

This skill works with:
- root-cause-tracing - How to trace back through call stack
- defense-in-depth-validation - Add validation after finding root cause
- verification-before-completion - Verify fix worked before claiming success

## Real-World Impact

From debugging sessions:
- Systematic approach: 15-30 minutes to fix
- Random fixes approach: 2-3 hours of thrashing
- First-time fix rate: 95% vs 40%
- New bugs introduced: Near zero vs common

Overview

This skill defines a four-phase, production-ready debugging framework that enforces root-cause investigation before any fixes are attempted. It prevents guesswork, reduces regressions, and guides engineers through evidence collection, pattern analysis, hypothesis testing, and controlled implementation. Use it to make debugging deliberate, fast, and reproducible.

How this skill works

The skill requires completion of Phase 1 (root cause investigation) before any repair actions are proposed. It prescribes concrete steps: read errors, reproduce reliably, add instrumentation across component boundaries, trace data flow, compare to working examples, form single hypotheses, test minimally, and only then implement a single, test-backed fix. If multiple fixes fail, it forces an architecture-level reassessment rather than continued thrashing.

When to use it

  • Any bug, failing test, or unexpected behavior
  • Build, CI, or deployment failures and integration issues
  • Performance regressions and intermittent production errors
  • When you or the team are under time pressure
  • Whenever a quick guess feels tempting instead of investigation

Best practices

  • Always reproduce the issue reliably before changing code
  • Log inputs/outputs at each component boundary to isolate failure layer
  • Compare broken code to a known working example line-by-line
  • Form a single, specific hypothesis and make the smallest change that tests it
  • Create an automated failing test before implementing the fix
  • If you’ve tried 3+ independent fixes, stop and question the architecture

Example use cases

  • A flaky CI job where secrets appear in some pipeline stages but not others—add instrumentation to find the break point
  • A deep stack-trace error—trace backward to the origin of the bad value rather than patching the symptom
  • A production bug where multiple quick fixes have been tried—return to Phase 1 and gather more evidence
  • A failing integration test—find a working example, compare differences, then test a minimal hypothesis
  • Performance regression after a dependency update—identify differences and test a single rollback or patch

FAQ

What if I’m pressured to deliver a hotfix immediately?

Follow Phase 1 quickly: reproduce, read errors, and add minimal instrumentation. Rapid evidence gathering is faster and safer than blind fixes. If a one-off mitigation is unavoidable, document it and return to the process immediately.

How many changes can I make when testing a hypothesis?

Only one. Make the smallest possible change to isolate causality. Multiple simultaneous changes obscure which action produced the outcome.