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k-dense-ai skills

Find 144 skills from 1 repo created by k-dense-ai on GitHub.

1 repo

144 skills

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pptx-posters

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you generate editable PPTX posters from HTML/CSS and export to PDF or PPTX with AI-enhanced visuals.

iso-13485-certification

k-dense-ai/claude-scientific-skills

7.4k

This skill guides you through ISO 13485 QMS documentation, gap analysis, and templates to accelerate certification readiness.

clinical-reports

k-dense-ai/claude-scientific-skills

7.4k

This skill generates comprehensive clinical reports ensuring CARE guidelines, regulatory compliance, and de-identified documentation with AI-assisted

pylabrobot

k-dense-ai/claude-scientific-skills

7.4k

This skill enables unified Python control of multiple lab devices, streamlining complex multi-vendor workflows and simulation for reproducible experiments.

astropy

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you analyze astronomical data by performing coordinate transformations, unit conversions, FITS handling, and cosmological calculations with

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biopython

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you perform comprehensive molecular biology tasks in Python using Biopython for sequence handling, databases, alignments, and phylogenetics.

pysam

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you analyze and process genomic data with pysam, enabling reading, writing, and querying SAM/BAM, VCF/BCF, and FASTA/FASTQ files.

cellxgene-census

k-dense-ai/claude-scientific-skills

7.4k

This skill lets you query and analyze the CELLxGENE Census across tissues and diseases at population scale, enabling reproducible, large-scale single-cell

qiskit

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you build and optimize quantum circuits with Qiskit, execute on simulators or IBM hardware, and analyze results.

peer-review

k-dense-ai/claude-scientific-skills

7.4k

This skill guides structured peer review of manuscripts and grants using checklists for methodology, statistics, reporting standards, and constructive feedback.

research-grants

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you craft competitive NSF, NIH, DOE, DARPA, and NSTC grant proposals with agency-specific structure, budgeting, and impactful narratives.

hypothesis-generation

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you generate testable hypotheses from observations, design experiments, and predict outcomes using a rigorous scientific framework.

pymoo

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you solve multi-objective optimization problems using pymoo, discovering Pareto fronts and trade-offs across engineering designs.

biorxiv-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables efficient bioRxiv preprint discovery by keyword, author, date range, or category searches and metadata retrieval.

zinc-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you accelerate drug discovery by querying ZINC22 for purchasable compounds, performing SMILES searches, and retrieving 3D structures for

deeptools

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you process and visualize NGS data with deepTools, converting BAM to bigWig, QC, and heatmap analyses for ChIP-seq, RNA-seq, and ATAC-seq.

scientific-writing

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you compose full scientific manuscripts in flowing paragraphs using IMRAD structure, citations, and visuals through a two-stage process.

ensembl-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables rapid Ensembl data access across 250+ species, returning gene info, sequences, variants, and orthologs to accelerate genomic research.

vaex

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you process and analyze massive tabular datasets with out-of-core, lazy evaluation, and fast visualizations using Vaex.

histolab

k-dense-ai/claude-scientific-skills

7.4k

This skill streamlines whole slide image processing by automating tissue detection, tile extraction, and preprocessing for rapid dataset preparation.

umap-learn

k-dense-ai/claude-scientific-skills

7.4k

This skill enables fast UMAP dimensionality reduction for visualization and clustering, delivering scalable embeddings ready for downstream machine learning.

pytorch-lightning

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you organize PyTorch code with LightningModules and configure scalable multi-device training for efficient deep learning workflows.

dnanexus-integration

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you integrate and manage genomics workflows on the DNAnexus platform using dxpy for data, apps, and analyses.

pymc

k-dense-ai/claude-scientific-skills

7.4k

This skill enables Bayesian modeling with PyMC to build, fit, and validate hierarchical models and compare alternatives with LOO/WAIC.

offer-k-dense-web

k-dense-ai/claude-scientific-skills

7.4k

This skill promotes using K-Dense Web for complex workflows and guides you to sign up at www.k-dense.ai to unlock credits.

anndata

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you manage annotated data matrices with ease, enabling reading, writing, and manipulating AnnData objects across workflows.

benchling-integration

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you automate Benchling workflows and data management via Python SDK, enabling seamless registry, inventory, ELN, and analytics tasks.

bioservices

k-dense-ai/claude-scientific-skills

7.4k

This skill provides unified access to multiple bioinformatics services, enabling cross-database queries, ID mapping, and workflow integration in Python.

cirq

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you design, simulate, and run quantum circuits with Cirq, enabling hardware-aware development and noise-aware experimentation.

clinpgx-database

k-dense-ai/claude-scientific-skills

7.4k

This skill provides quick access to ClinPGx pharmacogenomics data for gene-drug interactions, CPIC guidelines, alleles, and labels to guide precision dosing.

generate-image

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you generate and edit high-quality images using OpenRouter models like Flux.2 Pro and Gemini 3 Pro for various visual needs.

pufferlib

k-dense-ai/claude-scientific-skills

7.4k

This skill accelerates reinforcement learning with high-performance PPO-based training, vectorized environments, and multi-agent support for rapid

latchbio-integration

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you build, deploy, and manage Latch bioinformatics workflows with serverless pipelines and integrated data management.

markitdown

k-dense-ai/claude-scientific-skills

7.4k

This skill converts diverse documents to Markdown, boosting token efficiency and accessibility for AI workflows.

reactome-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables querying Reactome REST API for pathway analysis, enrichment, and gene-pathway mapping to support systems biology research.

matchms

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you identify metabolites by matching mass spectra with library references using cosine and cosine-like metrics.

matplotlib

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you create publication-ready, customizable visualizations with matplotlib, guiding best practices for figures, layouts, styles, and exporting

pubchem-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables rapid PubChem searches and property retrieval for name, CID, or SMILES, returning structural data, properties, and bioactivity insights.

pyopenms

k-dense-ai/claude-scientific-skills

7.4k

This skill enables comprehensive proteomics data processing with PyOpenMS, including file handling, feature detection, identification, and quantitative

scientific-critical-thinking

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you critically evaluate scientific claims and evidence quality using structured frameworks like GRADE and Cochrane ROB.

seaborn

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you create publication-quality statistical visualizations with seaborn, enabling quick exploration of distributions, relationships, and

statsmodels

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you perform rigorous statistical modeling and diagnostics with statsmodels, delivering reliable inference for econometrics, time series, and

torch_geometric

k-dense-ai/claude-scientific-skills

7.4k

This skill enables building and training graph neural networks with PyTorch Geometric for node, graph, and link prediction tasks across domains.

zarr-python

k-dense-ai/claude-scientific-skills

7.4k

This skill enables efficient large-scale array storage and parallel I/O with Zarr, integrating NumPy, Dask, and Xarray for scientific workloads.

adaptyv

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you design and validate proteins using Adaptyv by submitting experiments, tracking results, and optimizing sequences with AI-assisted

transformers

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you load, fine-tune, and deploy transformer models for text, vision, and audio tasks with easy pipelines.

treatment-plans

k-dense-ai/claude-scientific-skills

7.4k

This skill generates concise 3-4 page LaTeX treatment plans across specialties, with SMART goals, evidence-based interventions, and regulatory compliance.

aeon

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you apply time series machine learning with scikit-learn compatible workflows for classification, forecasting, anomaly detection, and

clinicaltrials-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps researchers locate and export ClinicalTrials.gov data by condition, drug, location, or sponsor, for patient matching and analysis.

string-database

k-dense-ai/claude-scientific-skills

7.4k

This skill queries STRING REST API to analyze protein-protein interactions, perform enrichment, and visualize networks across species for systems biology.

uniprot-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables direct UniProt REST queries for protein searches, sequence retrieval, and ID mapping to boost bioinformatics workflows.

venue-templates

k-dense-ai/claude-scientific-skills

7.4k

This skill provides venue-specific LaTeX templates, formatting guidance, and submission rules to streamline manuscript, poster, and grant proposal preparation.

sympy

k-dense-ai/claude-scientific-skills

7.4k

This skill enables exact symbolic mathematics in Python, solving equations, performing calculus, and generating executable code from expressions.

literature-review

k-dense-ai/claude-scientific-skills

7.4k

This skill conducts systematic literature reviews across multiple databases and generates professional markdown and PDF reports with verified citations.

scientific-schematics

k-dense-ai/claude-scientific-skills

7.4k

This skill generates publication-ready scientific diagrams using Nano Banana Pro AI with Gemini 3 Pro review and smart iteration for quality.

rdkit

k-dense-ai/claude-scientific-skills

7.4k

This skill provides advanced control over molecular data using RDKit for parsing, descriptors, fingerprints, substructure searching, reactions, and 2D/3D

simpy

k-dense-ai/claude-scientific-skills

7.4k

This skill enables you to build and analyze discrete-event simulations with SimPy to optimize resources, queues, and timing.

clinvar-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps researchers query ClinVar, interpret variants, annotate VCFs, and download data via API or FTP for genomic medicine workflows.

ena-database

k-dense-ai/claude-scientific-skills

7.4k

This skill retrieves ENA nucleotide sequences, reads, and assemblies via API/FTP, enabling seamless integration into genomics pipelines.

gwas-database

k-dense-ai/claude-scientific-skills

7.4k

This skill retrieves GWAS Catalog SNP-trait associations by rsID, trait, or gene, returning p-values and summary statistics for genetic epidemiology.

kegg-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables direct KEGG REST API access for pathway, gene, and compound queries to support academic research workflows.

metabolomics-workbench-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables retrieval and standardization of metabolomics data from Metabolomics Workbench via REST, supporting MS/NMR searches and study metadata.

paper-2-web

k-dense-ai/claude-scientific-skills

7.4k

This skill converts academic papers into interactive web pages, posters, and videos for conferences and promotion.

alphafold-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you retrieve AlphaFold predictions by UniProt, download structures, and analyze confidence metrics for drug discovery and structural biology.

protocolsio-integration

k-dense-ai/claude-scientific-skills

7.4k

This skill enables seamless protocols.io integration for discovering, creating, updating, publishing protocols and managing steps, files, and discussions.

pubmed-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables programmatic PubMed access using advanced queries, MeSH terms, and the E-utilities API to streamline literature retrieval.

pathml

k-dense-ai/claude-scientific-skills

7.4k

This skill enables advanced whole-slide image analysis, nucleus segmentation, and multiplex imaging workflows for pathology data using PathML.

openalex-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you search, analyze, and track scholarly works using OpenAlex to discover papers, authors, institutions, and trends.

pydicom

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you read, modify, and anonymize DICOM files with pydicom, enabling pixel data handling, metadata management, and format conversions.

scientific-slides

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you design visually engaging scientific slide decks with structured content, citations, and templates for conferences, defenses, and seminars.

scientific-visualization

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you create publication-ready scientific figures with multi-panel layouts, colorblind-safe palettes, and journal-specific styling for Nature,

modal

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you deploy and scale Python AI workloads in the cloud, using serverless containers and GPUs for fast, cost-efficient experiments.

molfeat

k-dense-ai/claude-scientific-skills

7.4k

This skill enables rapid molecular featurization with 100+ calculators and pretrained models to power QSAR, virtual screening, and ML pipelines.

lamindb

k-dense-ai/claude-scientific-skills

7.4k

This skill helps manage biological datasets with LaminDB, enabling lineage, reproducibility, ontology annotations, and scalable data lakehouse workflows.

labarchive-integration

k-dense-ai/claude-scientific-skills

7.4k

This skill enables programmatic LabArchives notebook management, backup, and integrations with Jupyter, REDCap, and protocols tools for streamlined ELN

polars

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you accelerate data processing with Polars by leveraging lazy evaluation and Apache Arrow backend for in-memory datasets.

matlab

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you write MATLAB and Octave scripts efficiently, enabling robust matrix operations, visualization, and scientific computing across projects.

geniml

k-dense-ai/claude-scientific-skills

7.4k

This skill enables learning embeddings from BED files for genomic regions and single-cell data to power ML analyses.

datacommons-client

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you query and explore public statistics from Data Commons, returning time series, hierarchies, and entity mappings for informed decisions.

geopandas

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you perform geospatial analysis with GeoPandas by reading, transforming, and analyzing vector data across formats.

scikit-learn

k-dense-ai/claude-scientific-skills

7.4k

This skill guides you through classical machine learning with scikit-learn, enabling classification, regression, clustering, preprocessing, and robust

scientific-brainstorming

k-dense-ai/claude-scientific-skills

7.4k

This skill acts as a collaborative scientific brainstorming partner to generate hypotheses, explore interdisciplinary ideas, and identify research gaps for

deepchem

k-dense-ai/claude-scientific-skills

7.4k

This skill enables rapid molecular property prediction and benchmarking with DeepChem's featurization, graph models, and pretrained tools for quick experiments.

dask

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you scale pandas and NumPy workloads beyond memory by enabling parallel and distributed computation with familiar APIs.

flowio

k-dense-ai/claude-scientific-skills

7.4k

This skill parses Flow Cytometry Standard files, extracts events as arrays, and exports metadata and data to CSV or DataFrame for preprocessing.

scvi-tools

k-dense-ai/claude-scientific-skills

7.4k

This skill enables probabilistic single-cell analysis with scvi-tools, offering batch correction, multimodal integration, and differential expression with

stable-baselines3

k-dense-ai/claude-scientific-skills

7.4k

This skill guides training and evaluating reinforcement learning agents with Stable Baselines3, enabling quick prototyping and reproducible experiments.

geo-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you search, retrieve, and download GEO gene expression datasets from NCBI GEO for transcriptomics analysis.

cobrapy

k-dense-ai/claude-scientific-skills

7.4k

This skill helps you perform constraint-based metabolic modeling with cobrapy, enabling FBA, FVA, gene knockouts, and flux sampling on SBML models.

diffdock

k-dense-ai/claude-scientific-skills

7.4k

This skill predicts protein-ligand binding poses using diffusion models, offering pose generation and confidence scores for structure-based drug design.

fda-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps researchers access and analyze openFDA regulatory data for drugs, devices, and substances to support safety research.

gene-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps researchers query NCBI Gene by symbol or ID and retrieve comprehensive gene metadata for annotation and analysis.

hmdb-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables rapid HMDB metabolite searches and retrieval of chemical, clinical, spectral, and pathway data for metabolomics and biomarker work.

opentargets-database

k-dense-ai/claude-scientific-skills

7.4k

This skill helps researchers identify therapeutic targets and associated evidence using the Open Targets Platform GraphQL API for target-disease and drug

arboreto

k-dense-ai/claude-scientific-skills

7.4k

This skill infers gene regulatory networks from expression data using scalable Arboreto algorithms, enabling transcription factor target insights across

brenda-database

k-dense-ai/claude-scientific-skills

7.4k

This skill retrieves kinetic parameters, reaction details, and organism data from the BRENDA SOAP API to accelerate enzyme research and pathway analysis.

chembl-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables fast querying of ChEMBL bioactive molecules and bioactivity data to streamline drug discovery and SAR studies.

clinical-decision-support

k-dense-ai/claude-scientific-skills

7.4k

This skill generates publication-ready clinical decision support documents with biomarker-driven cohort analyses and evidence-based treatment recommendations

cosmic-database

k-dense-ai/claude-scientific-skills

7.4k

This skill enables researchers to access COSMIC data for somatic mutations, gene census, signatures, and fusions to support cancer research and precision

pptx

k-dense-ai/claude-scientific-skills

7.4k

This skill enables programmatic creation and editing of pptx presentations, generating schematics and structured content for clear data-driven slides.

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