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dnanexus-integration
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you integrate and manage genomics workflows on the DNAnexus platform using dxpy for data, apps, and analyses.
clinvar-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps researchers query ClinVar, interpret variants, annotate VCFs, and download data via API or FTP for genomic medicine workflows.
geopandas
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you perform geospatial analysis with GeoPandas by reading, transforming, and analyzing vector data across formats.
deepchem
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid molecular property prediction and benchmarking with DeepChem's featurization, graph models, and pretrained tools for quick experiments.
paper-2-web
k-dense-ai/claude-scientific-skills
7.4k
This skill converts academic papers into interactive web pages, posters, and videos for conferences and promotion.
research-lookup
k-dense-ai/claude-scientific-skills
7.4k
This skill enables real-time research lookup across Perplexity Sonar models, selecting the optimal probe for complex queries and returning cited academic
gene-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps researchers query NCBI Gene by symbol or ID and retrieve comprehensive gene metadata for annotation and analysis.
hmdb-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid HMDB metabolite searches and retrieval of chemical, clinical, spectral, and pathway data for metabolomics and biomarker work.
scientific-writing
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you compose full scientific manuscripts in flowing paragraphs using IMRAD structure, citations, and visuals through a two-stage process.
gtars
k-dense-ai/claude-scientific-skills
7.4k
This skill accelerates genomic interval analysis by providing high-performance Rust tooling with Python bindings for overlap, coverage, and tokenization
qutip
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you simulate open quantum systems and analyze dynamics using QuTiP, enabling efficient master equations, decoherence, and visualization.
pdb-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you search, retrieve, and download PDB structures and metadata from the RCSB PDB for structural biology and drug discovery.
uspto-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables comprehensive USPTO patent, trademark, and assignment research using PatentSearch, PEDS, and TSDR APIs for IP analysis.
denario
k-dense-ai/claude-scientific-skills
7.4k
This skill automates end-to-end scientific research from data analysis to publication, coordinating agents to generate ideas, methodologies, experiments, and
get-available-resources
k-dense-ai/claude-scientific-skills
7.4k
This skill detects available CPU, GPU, memory, and disk resources to guide parallelism, memory strategies, and GPU acceleration before intensive tasks.
simpy
k-dense-ai/claude-scientific-skills
7.4k
This skill enables you to build and analyze discrete-event simulations with SimPy to optimize resources, queues, and timing.
biorxiv-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables efficient bioRxiv preprint discovery by keyword, author, date range, or category searches and metadata retrieval.
zinc-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you accelerate drug discovery by querying ZINC22 for purchasable compounds, performing SMILES searches, and retrieving 3D structures for
pymc
k-dense-ai/claude-scientific-skills
7.4k
This skill enables Bayesian modeling with PyMC to build, fit, and validate hierarchical models and compare alternatives with LOO/WAIC.
pubchem-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid PubChem searches and property retrieval for name, CID, or SMILES, returning structural data, properties, and bioactivity insights.
seaborn
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you create publication-quality statistical visualizations with seaborn, enabling quick exploration of distributions, relationships, and
market-research-reports
k-dense-ai/claude-scientific-skills
7.4k
This skill generates professional market research reports (50+ pages) with LaTeX formatting, data-driven analysis, and curated visuals.
scientific-schematics
k-dense-ai/claude-scientific-skills
7.4k
This skill generates publication-ready scientific diagrams using Nano Banana Pro AI with Gemini 3 Pro review and smart iteration for quality.
sympy
k-dense-ai/claude-scientific-skills
7.4k
This skill enables exact symbolic mathematics in Python, solving equations, performing calculus, and generating executable code from expressions.
rdkit
k-dense-ai/claude-scientific-skills
7.4k
This skill provides advanced control over molecular data using RDKit for parsing, descriptors, fingerprints, substructure searching, reactions, and 2D/3D
literature-review
k-dense-ai/claude-scientific-skills
7.4k
This skill conducts systematic literature reviews across multiple databases and generates professional markdown and PDF reports with verified citations.
ena-database
k-dense-ai/claude-scientific-skills
7.4k
This skill retrieves ENA nucleotide sequences, reads, and assemblies via API/FTP, enabling seamless integration into genomics pipelines.
gwas-database
k-dense-ai/claude-scientific-skills
7.4k
This skill retrieves GWAS Catalog SNP-trait associations by rsID, trait, or gene, returning p-values and summary statistics for genetic epidemiology.
kegg-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables direct KEGG REST API access for pathway, gene, and compound queries to support academic research workflows.
metabolomics-workbench-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables retrieval and standardization of metabolomics data from Metabolomics Workbench via REST, supporting MS/NMR searches and study metadata.
alphafold-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you retrieve AlphaFold predictions by UniProt, download structures, and analyze confidence metrics for drug discovery and structural biology.
protocolsio-integration
k-dense-ai/claude-scientific-skills
7.4k
This skill enables seamless protocols.io integration for discovering, creating, updating, publishing protocols and managing steps, files, and discussions.
pubmed-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables programmatic PubMed access using advanced queries, MeSH terms, and the E-utilities API to streamline literature retrieval.
pathml
k-dense-ai/claude-scientific-skills
7.4k
This skill enables advanced whole-slide image analysis, nucleus segmentation, and multiplex imaging workflows for pathology data using PathML.
openalex-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you search, analyze, and track scholarly works using OpenAlex to discover papers, authors, institutions, and trends.
pydicom
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you read, modify, and anonymize DICOM files with pydicom, enabling pixel data handling, metadata management, and format conversions.
scientific-slides
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you design visually engaging scientific slide decks with structured content, citations, and templates for conferences, defenses, and seminars.
scientific-visualization
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you create publication-ready scientific figures with multi-panel layouts, colorblind-safe palettes, and journal-specific styling for Nature,
modal
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you deploy and scale Python AI workloads in the cloud, using serverless containers and GPUs for fast, cost-efficient experiments.
molfeat
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid molecular featurization with 100+ calculators and pretrained models to power QSAR, virtual screening, and ML pipelines.
polars
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you accelerate data processing with Polars by leveraging lazy evaluation and Apache Arrow backend for in-memory datasets.
lamindb
k-dense-ai/claude-scientific-skills
7.4k
This skill helps manage biological datasets with LaminDB, enabling lineage, reproducibility, ontology annotations, and scalable data lakehouse workflows.
labarchive-integration
k-dense-ai/claude-scientific-skills
7.4k
This skill enables programmatic LabArchives notebook management, backup, and integrations with Jupyter, REDCap, and protocols tools for streamlined ELN
matlab
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you write MATLAB and Octave scripts efficiently, enabling robust matrix operations, visualization, and scientific computing across projects.
geniml
k-dense-ai/claude-scientific-skills
7.4k
This skill enables learning embeddings from BED files for genomic regions and single-cell data to power ML analyses.
datacommons-client
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you query and explore public statistics from Data Commons, returning time series, hierarchies, and entity mappings for informed decisions.
scikit-learn
k-dense-ai/claude-scientific-skills
7.4k
This skill guides you through classical machine learning with scikit-learn, enabling classification, regression, clustering, preprocessing, and robust
scientific-brainstorming
k-dense-ai/claude-scientific-skills
7.4k
This skill acts as a collaborative scientific brainstorming partner to generate hypotheses, explore interdisciplinary ideas, and identify research gaps for
dask
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you scale pandas and NumPy workloads beyond memory by enabling parallel and distributed computation with familiar APIs.
flowio
k-dense-ai/claude-scientific-skills
7.4k
This skill parses Flow Cytometry Standard files, extracts events as arrays, and exports metadata and data to CSV or DataFrame for preprocessing.
scvi-tools
k-dense-ai/claude-scientific-skills
7.4k
This skill enables probabilistic single-cell analysis with scvi-tools, offering batch correction, multimodal integration, and differential expression with
stable-baselines3
k-dense-ai/claude-scientific-skills
7.4k
This skill guides training and evaluating reinforcement learning agents with Stable Baselines3, enabling quick prototyping and reproducible experiments.
geo-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you search, retrieve, and download GEO gene expression datasets from NCBI GEO for transcriptomics analysis.
cobrapy
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you perform constraint-based metabolic modeling with cobrapy, enabling FBA, FVA, gene knockouts, and flux sampling on SBML models.
diffdock
k-dense-ai/claude-scientific-skills
7.4k
This skill predicts protein-ligand binding poses using diffusion models, offering pose generation and confidence scores for structure-based drug design.
fda-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps researchers access and analyze openFDA regulatory data for drugs, devices, and substances to support safety research.
opentargets-database
k-dense-ai/claude-scientific-skills
7.4k
This skill helps researchers identify therapeutic targets and associated evidence using the Open Targets Platform GraphQL API for target-disease and drug
arboreto
k-dense-ai/claude-scientific-skills
7.4k
This skill infers gene regulatory networks from expression data using scalable Arboreto algorithms, enabling transcription factor target insights across
brenda-database
k-dense-ai/claude-scientific-skills
7.4k
This skill retrieves kinetic parameters, reaction details, and organism data from the BRENDA SOAP API to accelerate enzyme research and pathway analysis.
chembl-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables fast querying of ChEMBL bioactive molecules and bioactivity data to streamline drug discovery and SAR studies.
clinical-decision-support
k-dense-ai/claude-scientific-skills
7.4k
This skill generates publication-ready clinical decision support documents with biomarker-driven cohort analyses and evidence-based treatment recommendations
cosmic-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables researchers to access COSMIC data for somatic mutations, gene census, signatures, and fusions to support cancer research and precision
pptx
k-dense-ai/claude-scientific-skills
7.4k
This skill enables programmatic creation and editing of pptx presentations, generating schematics and structured content for clear data-driven slides.
xlsx
k-dense-ai/claude-scientific-skills
7.4k
This skill lets you create, edit, and analyze Excel files with formulas, formatting, and schema-aware validation for reliable, publication-ready work.
esm
k-dense-ai/claude-scientific-skills
7.4k
This skill enables generation, embedding, and design of proteins using ESM3 and ESM C for sequences, structures, and function.
fred-economic-data
k-dense-ai/claude-scientific-skills
7.4k
This skill provides streamlined access to FRED economic data, enabling rapid retrieval, transformation, and analysis of U.S.
imaging-data-commons
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you query and download public cancer imaging data from IDC, then visualize and inspect licenses for research use.
medchem
k-dense-ai/claude-scientific-skills
7.4k
This skill applies medicinal chemistry filters and rules to prioritize compounds, screen for PAINS, and assess drug-likeness for library triage.
neuropixels-analysis
k-dense-ai/claude-scientific-skills
7.4k
This skill guides Neuropixels data analysis from raw to curated units, enabling efficient preprocessing, sorting, and AI-assisted curation to accelerate
omero-integration
k-dense-ai/claude-scientific-skills
7.4k
This skill enables seamless OMERO data access and analysis via Python, simplifying image retrieval, ROI management, annotations, and batch processing workflows.
opentrons-integration
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you author Opentrons Protocol API v2 workflows in Python for OT-2 and Flex with reliable automation.
perplexity-search
k-dense-ai/claude-scientific-skills
7.4k
This skill performs AI-powered web searches with real-time Perplexity models to retrieve current information and cite sources.
pyhealth
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you develop, test, and deploy healthcare AI models with clinical data using PyHealth's modular pipelines.
pymatgen
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid materials analysis by creating, converting, and analyzing crystal structures, phase diagrams, and electronic data with pymatgen.
pytdc
k-dense-ai/claude-scientific-skills
7.4k
This skill provides ready-to-use therapeutics datasets and benchmarks to accelerate drug discovery and model evaluation.
scanpy
k-dense-ai/claude-scientific-skills
7.4k
This skill enables comprehensive single-cell RNA-seq analysis with scanpy, routing quality control, normalization, dimensionality reduction, clustering, and
scholar-evaluation
k-dense-ai/claude-scientific-skills
7.4k
This skill systematically evaluates scholarly work using the ScholarEval framework, delivering structured quality assessments, actionable feedback, and
shap
k-dense-ai/claude-scientific-skills
7.4k
This skill guides users through SHAP explanations for model predictions, computing feature importance, and generating interpretable visualizations across
torchdrug
k-dense-ai/claude-scientific-skills
7.4k
This skill helps researchers build and optimize graph neural networks for molecules, proteins, and knowledge graphs using TorchDrug.
statistical-analysis
k-dense-ai/claude-scientific-skills
7.4k
This skill guides statistical analysis by selecting tests, checking assumptions, and reporting APA results to support rigorous academic research.
hypogenic
k-dense-ai/claude-scientific-skills
7.4k
This skill automates data-driven hypothesis generation and testing using LLMs to accelerate scientific discovery from tabular data.
fluidsim
k-dense-ai/claude-scientific-skills
7.4k
This skill accelerates CFD simulations with fluidsim, enabling 2D/3D Navier-Stokes, stratified and shallow water flows, plus high-performance analysis.
datamol
k-dense-ai/claude-scientific-skills
7.4k
This skill simplifies cheminformatics tasks by providing a Pythonic wrapper around RDKit for parsing, standardizing, descriptors, fingerprints, and 3D
neurokit2
k-dense-ai/claude-scientific-skills
7.4k
This skill analyzes and processes diverse biosignals with NeuroKit2 to enable HRV, EEG, EDA, and multi-modal insights.
pydeseq2
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid differential expression analysis in Python by applying PyDESeq2 to identify DE genes, adjust for covariates, and visualize results.
scikit-bio
k-dense-ai/claude-scientific-skills
7.4k
This skill enables rapid bioinformatics analysis using scikit-bio to manipulate sequences, build phylogenies, compute diversity, and perform ordination and
rowan
k-dense-ai/claude-scientific-skills
7.4k
This skill enables cloud-based quantum chemistry workflows via Python API, automating pKa, conformer searches, docking, and AI protein cofolding.
plotly
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you create interactive, publication-quality visualizations with Plotly, enabling rapid exploratory analysis and dashboards.
docx
k-dense-ai/claude-scientific-skills
7.4k
This skill creates, edits, and analyzes .docx documents while preserving formatting, supporting tracked changes, comments, and text extraction for professional
pennylane
k-dense-ai/claude-scientific-skills
7.4k
This skill enables training quantum circuits with automatic differentiation and device portability across major backends for hybrid quantum-classical models.
drugbank-database
k-dense-ai/claude-scientific-skills
7.4k
This skill enables programmatic access to DrugBank for detailed pharmacology, interactions, targets, and chemical data to accelerate drug research.
etetoolkit
k-dense-ai/claude-scientific-skills
7.4k
This skill helps researchers analyze and visualize phylogenetic trees, detect evolutionary events, and annotate taxa using the ETE toolkit.
exploratory-data-analysis
k-dense-ai/claude-scientific-skills
7.4k
This skill performs automated exploratory data analysis on scientific files, detects formats, assesses quality, and generates detailed markdown reports with
citation-management
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you discover, verify, and format citations from Google Scholar and PubMed, generating accurate BibTeX entries for scholarly writing.
latex-posters
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you create publication ready LaTeX posters using beamerposter, tikzposter, or baposter with layouts, visuals, and accessibility.
pdf
k-dense-ai/claude-scientific-skills
7.4k
This skill enables programmatic PDF manipulation: extract text and tables, merge, split, create, and fill forms to streamline document processing.
gget
k-dense-ai/claude-scientific-skills
7.4k
This skill provides fast unified access to diverse bioinformatics data via a CLI and Python, enabling quick gene lookups, sequences, and analyses.
networkx
k-dense-ai/claude-scientific-skills
7.4k
This skill helps you create, analyze, and visualize complex networks with NetworkX, enabling efficient graph workflows and insightful relationship insights.