home / skills / jjuidev / jss / mcp-management

mcp-management skill

/.claude/skills/mcp-management

This skill discovers, analyzes, and executes MCP server tools to enable intelligent multi-server management without cluttering context.

npx playbooks add skill jjuidev/jss --skill mcp-management

Review the files below or copy the command above to add this skill to your agents.

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SKILL.md
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---
name: mcp-management
description: Manage MCP servers - discover, analyze, execute tools/prompts/resources. Use for MCP integrations, intelligent tool selection, multi-server management, context-efficient capability discovery.
---

# MCP Management

Skill for managing and interacting with Model Context Protocol (MCP) servers.

## Overview

MCP is an open protocol enabling AI agents to connect to external tools and data sources. This skill provides scripts and utilities to discover, analyze, and execute MCP capabilities from configured servers without polluting the main context window.

**Key Benefits**:
- Progressive disclosure of MCP capabilities (load only what's needed)
- Intelligent tool/prompt/resource selection based on task requirements
- Multi-server management from single config file
- Context-efficient: subagents handle MCP discovery and execution
- Persistent tool catalog: automatically saves discovered tools to JSON for fast reference

## When to Use This Skill

Use this skill when:
1. **Discovering MCP Capabilities**: Need to list available tools/prompts/resources from configured servers
2. **Task-Based Tool Selection**: Analyzing which MCP tools are relevant for a specific task
3. **Executing MCP Tools**: Calling MCP tools programmatically with proper parameter handling
4. **MCP Integration**: Building or debugging MCP client implementations
5. **Context Management**: Avoiding context pollution by delegating MCP operations to subagents

## Core Capabilities

### 1. Configuration Management

MCP servers configured in `.claude/.mcp.json`.

**Gemini CLI Integration** (recommended): Create symlink to `.gemini/settings.json`:
```bash
mkdir -p .gemini && ln -sf .claude/.mcp.json .gemini/settings.json
```

See [references/configuration.md](references/configuration.md) and [references/gemini-cli-integration.md](references/gemini-cli-integration.md).

**GEMINI.md Response Format**: Project root contains `GEMINI.md` that Gemini CLI auto-loads, enforcing structured JSON responses:
```json
{"server":"name","tool":"name","success":true,"result":<data>,"error":null}
```

This ensures parseable, consistent output instead of unpredictable natural language. The file defines:
- Mandatory JSON-only response format (no markdown, no explanations)
- Maximum 500 character responses
- Error handling structure
- Available MCP servers reference

**Benefits**: Programmatically parseable output, consistent error reporting, DRY configuration (format defined once), context-efficient (auto-loaded by Gemini CLI).

### 2. Capability Discovery

```bash
npx tsx scripts/cli.ts list-tools  # Saves to assets/tools.json
npx tsx scripts/cli.ts list-prompts
npx tsx scripts/cli.ts list-resources
```

Aggregates capabilities from multiple servers with server identification.

### 3. Intelligent Tool Analysis

LLM analyzes `assets/tools.json` directly - better than keyword matching algorithms.

### 4. Tool Execution

**Primary: Gemini CLI** (if available)
```bash
# IMPORTANT: Use stdin piping, NOT -p flag (deprecated, skips MCP init)
echo "Take a screenshot of https://example.com" | gemini -y -m <gemini.model>
```

**Secondary: Direct Scripts**
```bash
npx tsx scripts/cli.ts call-tool memory create_entities '{"entities":[...]}'
```

**Fallback: mcp-manager Subagent**

See [references/gemini-cli-integration.md](references/gemini-cli-integration.md) for complete examples.

## Implementation Patterns

### Pattern 1: Gemini CLI Auto-Execution (Primary)

Use Gemini CLI for automatic tool discovery and execution. Gemini CLI auto-loads `GEMINI.md` from project root to enforce structured JSON responses.

**Quick Example**:
```bash
# IMPORTANT: Use stdin piping, NOT -p flag (deprecated, skips MCP init)
# Add "Return JSON only per GEMINI.md instructions" to enforce structured output
echo "Take a screenshot of https://example.com. Return JSON only per GEMINI.md instructions." | gemini -y -m <gemini.model>
```

**Expected Output**:
```json
{"server":"puppeteer","tool":"screenshot","success":true,"result":"screenshot.png","error":null}
```

**Benefits**:
- Automatic tool discovery
- Structured JSON responses (parseable by Claude)
- GEMINI.md auto-loaded for consistent formatting
- Faster than subagent orchestration
- No natural language ambiguity

See [references/gemini-cli-integration.md](references/gemini-cli-integration.md) for complete guide.

### Pattern 2: Subagent-Based Execution (Fallback)

Use `mcp-manager` agent when Gemini CLI unavailable. Subagent discovers tools, selects relevant ones, executes tasks, reports back.

**Benefit**: Main context stays clean, only relevant tool definitions loaded when needed.

### Pattern 3: LLM-Driven Tool Selection

LLM reads `assets/tools.json`, intelligently selects relevant tools using context understanding, synonyms, and intent recognition.

### Pattern 4: Multi-Server Orchestration

Coordinate tools across multiple servers. Each tool knows its source server for proper routing.

## Scripts Reference

### scripts/mcp-client.ts

Core MCP client manager class. Handles:
- Config loading from `.claude/.mcp.json`
- Connecting to multiple MCP servers
- Listing tools/prompts/resources across all servers
- Executing tools with proper error handling
- Connection lifecycle management

### scripts/cli.ts

Command-line interface for MCP operations. Commands:
- `list-tools` - Display all tools and save to `assets/tools.json`
- `list-prompts` - Display all prompts
- `list-resources` - Display all resources
- `call-tool <server> <tool> <json>` - Execute a tool

**Note**: `list-tools` persists complete tool catalog to `assets/tools.json` with full schemas for fast reference, offline browsing, and version control.

## Quick Start

**Method 1: Gemini CLI** (recommended)
```bash
npm install -g gemini-cli
mkdir -p .gemini && ln -sf .claude/.mcp.json .gemini/settings.json
# IMPORTANT: Use stdin piping, NOT -p flag (deprecated, skips MCP init)
# GEMINI.md auto-loads to enforce JSON responses
echo "Take a screenshot of https://example.com. Return JSON only per GEMINI.md instructions." | gemini -y -m <gemini.model>
```

Returns structured JSON: `{"server":"puppeteer","tool":"screenshot","success":true,"result":"screenshot.png","error":null}`

**Method 2: Scripts**
```bash
cd .claude/skills/mcp-management/scripts && npm install
npx tsx cli.ts list-tools  # Saves to assets/tools.json
npx tsx cli.ts call-tool memory create_entities '{"entities":[...]}'
```

**Method 3: mcp-manager Subagent**

See [references/gemini-cli-integration.md](references/gemini-cli-integration.md) for complete guide.

## Technical Details

See [references/mcp-protocol.md](references/mcp-protocol.md) for:
- JSON-RPC protocol details
- Message types and formats
- Error codes and handling
- Transport mechanisms (stdio, HTTP+SSE)
- Best practices

## Integration Strategy

### Execution Priority

1. **Gemini CLI** (Primary): Fast, automatic, intelligent tool selection
   - Check: `command -v gemini`
   - Execute: `echo "<task>" | gemini -y -m <gemini.model>`
   - **IMPORTANT**: Use stdin piping, NOT `-p` flag (deprecated, skips MCP init)
   - Best for: All tasks when available

2. **Direct CLI Scripts** (Secondary): Manual tool specification
   - Use when: Need specific tool/server control
   - Execute: `npx tsx scripts/cli.ts call-tool <server> <tool> <args>`

3. **mcp-manager Subagent** (Fallback): Context-efficient delegation
   - Use when: Gemini unavailable or failed
   - Keeps main context clean

### Integration with Agents

The `mcp-manager` agent uses this skill to:
- Check Gemini CLI availability first
- Execute via `gemini` command if available
- Fallback to direct script execution
- Discover MCP capabilities without loading into main context
- Report results back to main agent

This keeps main agent context clean and enables efficient MCP integration.

Overview

This skill manages Model Context Protocol (MCP) servers to discover, analyze, and execute external tools, prompts, and resources. It centralizes multi-server configuration, progressively loads capabilities to avoid context pollution, and persists a searchable tool catalog. Use it to delegate MCP operations to subagents or to integrate MCP into automated workflows.

How this skill works

The skill reads server configuration from a single config file and queries each MCP server to aggregate tools, prompts, and resources. Discovered capabilities are saved to a persistent JSON catalog that LLM-driven logic or CLI scripts can analyze for intelligent tool selection. Execution can run through the Gemini CLI (preferred), direct TypeScript/Python scripts, or a subagent fallback that isolates MCP interaction from the main context.

When to use it

  • Discover available MCP tools, prompts, and resources across multiple servers
  • Select the best MCP tool(s) for a specific task using LLM-assisted analysis
  • Execute MCP tools programmatically with correct parameter handling
  • Integrate or debug MCP client implementations and protocols
  • Delegate MCP operations to subagents to keep the main context clean

Best practices

  • Prefer Gemini CLI for automatic discovery and structured JSON responses; always use stdin piping rather than deprecated flags
  • Maintain a single config file for all MCP servers to simplify multi-server orchestration
  • Persist discovered capabilities to assets/tools.json for fast lookup and offline analysis
  • Use LLM-driven analysis of the saved catalog rather than naive keyword matching for better tool selection
  • Fallback to subagent execution when Gemini CLI is unavailable to avoid context pollution

Example use cases

  • List and save all tools from configured MCP servers to assets/tools.json for auditing or version control
  • Ask the LLM to choose the right tool(s) for a task by pointing it at the saved tools.json catalog
  • Invoke a screenshot tool on a remote Puppeteer server via Gemini CLI and receive structured JSON output
  • Run direct scripts to call a specific MCP tool when precise server/tool control is needed
  • Use the mcp-manager subagent to perform multi-server orchestration without loading tool schemas into the main agent context

FAQ

What is the recommended execution path?

Check for Gemini CLI first and use stdin piping for automatic discovery and structured JSON output; fall back to direct scripts or subagent execution if unavailable.

How do I keep the main agent context from growing with tool schemas?

Use the subagent pattern: the subagent performs discovery and execution and returns only concise, structured results to the main agent.