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drshailesh88 skills
Find 175 skills from 1 repo created by drshailesh88 on GitHub.
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deepchem
drshailesh88/integrated_content_os
1
Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.
protocolsio-integration
drshailesh88/integrated_content_os
1
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
datacommons-client
drshailesh88/integrated_content_os
1
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population statistics, GDP figures, unemployment rates, disease prevalence, geographic entity resolution, and exploring relationships between statistical entities.
metabolomics-workbench-database
drshailesh88/integrated_content_os
1
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
clinicaltrials-database
drshailesh88/integrated_content_os
1
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
transformers
drshailesh88/integrated_content_os
1
This skill should be used when working with pre-trained transformer models for natural language processing, computer vision, audio, or multimodal tasks. Use for text generation, classification, question answering, translation, summarization, image classification, object detection, speech recognition, and fine-tuning models on custom datasets.
geopandas
drshailesh88/integrated_content_os
1
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
clinical-decision-support
drshailesh88/integrated_content_os
1
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
neurokit2
drshailesh88/integrated_content_os
1
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.
content-research-writer
drshailesh88/integrated_content_os
1
Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section. Transforms your writing process from solo effort to collaborative partnership.
pysam
drshailesh88/integrated_content_os
1
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
adaptyv
drshailesh88/integrated_content_os
1
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
content-os
drshailesh88/integrated_content_os
1
Content OS orchestrator - the master skill that produces ALL content types from one seed idea (forward mode) or splits long-form content into short-form pieces (backward mode). Invokes research, writing, quality review, and visual generation skills in a coordinated pipeline. Long-form content goes through full quality gates; short-form gets quick accuracy pass.
cardiology-visual-system
drshailesh88/integrated_content_os
1
Unified visual content system for cardiology thought leadership. Automatically routes requests to the optimal tool—Fal.ai for blog imagery, Gemini for infographics, Mermaid for flowcharts/pathways, Marp for slides, Plotly for data visualization. One skill handles all visual needs within Claude Code.
carousel-generator
drshailesh88/integrated_content_os
1
Instagram carousel generator. Creates 1080x1080px branded slides from text/markdown input. Use this skill when you need to generate Instagram carousel slides with Dr. Shailesh Singh's brand colors, typography, and footer. Supports both @heartdocshailesh and @dr.shailesh.singh accounts.
viral-content-predictor
drshailesh88/integrated_content_os
1
Analyzes medical education content ideas from PDFs/DOCX files to predict viral potential (views, likes, shares, AVD) and provides actionable insights. Use when the user needs to evaluate content ideas for engagement potential, get predictive analytics on video performance, research trending topics in medical/health niches, analyze YouTube comments and audience sentiment, identify knowledge gaps and myths, or prioritize content ideas based on viral likelihood.
twitter-longform-medical
drshailesh88/integrated_content_os
1
Write data-driven, evidence-first long-form Twitter posts on medicine and cardiology. Use when the user wants to: (1) Create thought leadership content in the style of Eric Topol, Peter Attia, Andrew Huberman, or Rhonda Patrick, (2) Present clinical evidence with charts, data, and Q1 journal citations for educated non-specialist audiences, (3) Write confident, matter-of-fact medical content that is rigorous without being inaccessible, (4) Explain trials, drugs, or medical phenomena using data visualization and systematic evidence review, (5) Build authority through methodological rigor and clear conclusions backed by evidence. NOT for newsletters or Substack. For Twitter long-form posts only.
cardiology-content-repurposer
drshailesh88/integrated_content_os
1
Transform long-form cardiology content (YouTube transcripts, newsletters, PDFs, knowledge bases) into high-quality thought leadership content across multiple formats. Use when the user wants to repurpose medical/cardiology content into: (1) Short newspaper articles (Inshorts style), (2) Atomic essays, (3) Tweets, (4) Twitter threads, or (5) Medium-style blogs. Maintains authentic interventional cardiologist voice with clinical authority, uses 4A framework, targets specific patient archetypes, and leverages PubMed for evidence-based citations when needed.
x-post-creator-skill
drshailesh88/integrated_content_os
1
Create scientifically rigorous, engaging X (Twitter) posts for cardiology thought leadership. Use when generating social media content for a cardiologist targeting patients, caregivers, health optimizers, people with lifestyle diseases (hypertension, diabetes, cholesterol), and sedentary individuals seeking prevention. Produces batches of 10 unique posts using strategic combinations of 300+ cardiology seed ideas, 215+ modifiers, 5 audience archetypes, awareness levels, and proven copywriting frameworks (4A, Magical Multipliers). Features self-improvement through accumulated feedback.
clinpgx-database
drshailesh88/integrated_content_os
1
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
hmdb-database
drshailesh88/integrated_content_os
1
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
pufferlib
drshailesh88/integrated_content_os
1
This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom environment development, vectorized parallel simulation, multi-agent systems, or integration with existing RL environments (Gymnasium, PettingZoo, Atari, Procgen, etc.). Use this skill for implementing PPO training, creating PufferEnv environments, optimizing RL performance, or developing policies with CNNs/LSTMs.
influencer-analyzer
drshailesh88/integrated_content_os
1
Track and analyze cardiology content creators (Topol, Attia, York Cardiology, Indian channels). Discovers content patterns, topics, engagement, and gap opportunities for your Hinglish content strategy.
pptx-posters
drshailesh88/integrated_content_os
1
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
torch_geometric
drshailesh88/integrated_content_os
1
Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.
cardiology-newsletter-writer
drshailesh88/integrated_content_os
1
Create evidence-based cardiology newsletters for thought leadership in Eric Topol's authoritative Ground Truths style. Use when the user wants to analyze trending medical topics with engagement predictions, conduct data-driven topic selection, research medical literature using PubMed, or write comprehensive well-referenced newsletters that build professional authority as an interventional cardiologist. Handles complete workflow from trend analysis to final draft with smooth analytical flow between topics.
biopython
drshailesh88/integrated_content_os
1
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
article-extractor
drshailesh88/integrated_content_os
1
Extract clean article content from URLs (blog posts, articles, tutorials) and save as readable text. Use when user wants to download, extract, or save an article/blog post from a URL without ads, navigation, or clutter.
quick-topic-researcher
drshailesh88/integrated_content_os
1
Rapid topic mastery for video/content prep. Takes a topic → generates 5 research questions → parallel PubMed + web search → outputs McKinsey-style brief in 5 minutes. Use BEFORE recording videos or writing content.
treatment-plans
drshailesh88/integrated_content_os
1
Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions with minimal text citations, regulatory compliance (HIPAA), and professional formatting. Prioritizes brevity and clinical actionability.
cobrapy
drshailesh88/integrated_content_os
1
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
esm
drshailesh88/integrated_content_os
1
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.
pymoo
drshailesh88/integrated_content_os
1
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.
pytdc
drshailesh88/integrated_content_os
1
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
pdb-database
drshailesh88/integrated_content_os
1
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
biorxiv-database
drshailesh88/integrated_content_os
1
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
pdf
drshailesh88/integrated_content_os
1
PDF manipulation toolkit. Extract text/tables, create PDFs, merge/split, fill forms, for programmatic document processing and analysis.
molfeat
drshailesh88/integrated_content_os
1
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
networkx
drshailesh88/integrated_content_os
1
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
clinical-reports
drshailesh88/integrated_content_os
1
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
arboreto
drshailesh88/integrated_content_os
1
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
astropy
drshailesh88/integrated_content_os
1
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
cremieux-cardio
drshailesh88/integrated_content_os
1
Write data-driven, evidence-first long-form Twitter posts on medicine and cardiology. Use when the user wants to: (1) Create thought leadership content in the style of Eric Topol, Peter Attia, Andrew Huberman, or Rhonda Patrick, (2) Present clinical evidence with charts, data, and Q1 journal citations for educated non-specialist audiences, (3) Write confident, matter-of-fact medical content that is rigorous without being inaccessible, (4) Explain trials, drugs, or medical phenomena using data visualization and systematic evidence review, (5) Build authority through methodological rigor and clear conclusions backed by evidence. NOT for newsletters or Substack. For Twitter long-form posts only.
infographic-generator
drshailesh88/integrated_content_os
1
Generate world-class medical infographics using carousel-level visual language. Templates include hero stats, multi-section layouts, comparisons, myth-busters, process flows, and patient checklists. Default 1080x1350 for Instagram.
multi-model-writer
drshailesh88/integrated_content_os
1
Unified writing system with intelligent model routing. Default: Claude. Options: GLM-4.7 (cheapest), GPT-4o/mini, Gemini, Grok. Includes browser automation for web interfaces. Cost-aware routing based on task complexity.
cellxgene-census
drshailesh88/integrated_content_os
1
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
alphafold-database
drshailesh88/integrated_content_os
1
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
hypothesis-generation
drshailesh88/integrated_content_os
1
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
pylabrobot
drshailesh88/integrated_content_os
1
Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots (Hamilton STAR, Opentrons OT-2, Tecan EVO), integrating lab equipment, managing deck layouts and resources (plates, tips, containers), reading plates, or creating reproducible laboratory protocols. Applicable for both simulated protocols and physical hardware control.
qiskit
drshailesh88/integrated_content_os
1
Comprehensive quantum computing toolkit for building, optimizing, and executing quantum circuits. Use when working with quantum algorithms, simulations, or quantum hardware including (1) Building quantum circuits with gates and measurements, (2) Running quantum algorithms (VQE, QAOA, Grover), (3) Transpiling/optimizing circuits for hardware, (4) Executing on IBM Quantum or other providers, (5) Quantum chemistry and materials science, (6) Quantum machine learning, (7) Visualizing circuits and results, or (8) Any quantum computing development task.
string-database
drshailesh88/integrated_content_os
1
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
cirq
drshailesh88/integrated_content_os
1
Quantum computing framework for building, simulating, optimizing, and executing quantum circuits. Use this skill when working with quantum algorithms, quantum circuit design, quantum simulation (noiseless or noisy), running on quantum hardware (Google, IonQ, AQT, Pasqal), circuit optimization and compilation, noise modeling and characterization, or quantum experiments and benchmarking (VQE, QAOA, QPE, randomized benchmarking).
paper-2-web
drshailesh88/integrated_content_os
1
This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.
statsmodels
drshailesh88/integrated_content_os
1
Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and econometric analysis.
stable-baselines3
drshailesh88/integrated_content_os
1
Use this skill for reinforcement learning tasks including training RL agents (PPO, SAC, DQN, TD3, DDPG, A2C, etc.), creating custom Gym environments, implementing callbacks for monitoring and control, using vectorized environments for parallel training, and integrating with deep RL workflows. This skill should be used when users request RL algorithm implementation, agent training, environment design, or RL experimentation.
sympy
drshailesh88/integrated_content_os
1
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating algebraic expressions, working with matrices symbolically, physics calculations, number theory problems, geometry computations, and generating executable code from mathematical expressions. Apply this skill when the user needs exact symbolic results rather than numerical approximations, or when working with mathematical formulas that contain variables and parameters.
pymc
drshailesh88/integrated_content_os
1
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
kegg-database
drshailesh88/integrated_content_os
1
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
rdkit
drshailesh88/integrated_content_os
1
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.
matplotlib
drshailesh88/integrated_content_os
1
Foundational plotting library. Create line plots, scatter, bar, histograms, heatmaps, 3D, subplots, export PNG/PDF/SVG, for scientific visualization and publication figures.
simpy
drshailesh88/integrated_content_os
1
Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics, or any system where entities interact with shared resources over time.
uniprot-database
drshailesh88/integrated_content_os
1
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
latex-posters
drshailesh88/integrated_content_os
1
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
scvi-tools
drshailesh88/integrated_content_os
1
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.
mcp-management
drshailesh88/integrated_content_os
1
Manage Model Context Protocol (MCP) servers - discover, analyze, and execute tools/prompts/resources from configured MCP servers. Use when working with MCP integrations, need to discover available MCP capabilities, filter MCP tools for specific tasks, execute MCP tools programmatically, access MCP prompts/resources, or implement MCP client functionality. Supports intelligent tool selection, multi-server management, and context-efficient capability discovery.
scientific-brainstorming
drshailesh88/integrated_content_os
1
Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving.
pubmed-database
drshailesh88/integrated_content_os
1
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
anndata
drshailesh88/integrated_content_os
1
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.
histolab
drshailesh88/integrated_content_os
1
Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.
benchling-integration
drshailesh88/integrated_content_os
1
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
ensembl-database
drshailesh88/integrated_content_os
1
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
labarchive-integration
drshailesh88/integrated_content_os
1
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
markitdown
drshailesh88/integrated_content_os
1
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
reactome-database
drshailesh88/integrated_content_os
1
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
venue-templates
drshailesh88/integrated_content_os
1
Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
pennylane
drshailesh88/integrated_content_os
1
Cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Enables building and training quantum circuits with automatic differentiation, seamless integration with PyTorch/JAX/TensorFlow, and device-independent execution across simulators and quantum hardware (IBM, Amazon Braket, Google, Rigetti, IonQ, etc.). Use when working with quantum circuits, variational quantum algorithms (VQE, QAOA), quantum neural networks, hybrid quantum-classical models, molecular simulations, quantum chemistry calculations, or any quantum computing tasks requiring gradient-based optimization, hardware-agnostic programming, or quantum machine learning workflows.
scientific-schematics
drshailesh88/integrated_content_os
1
Create publication-quality scientific diagrams using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.
bioservices
drshailesh88/integrated_content_os
1
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
exploratory-data-analysis
drshailesh88/integrated_content_os
1
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
literature-review
drshailesh88/integrated_content_os
1
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
dask
drshailesh88/integrated_content_os
1
Parallel/distributed computing. Scale pandas/NumPy beyond memory, parallel DataFrames/Arrays, multi-file processing, task graphs, for larger-than-RAM datasets and parallel workflows.
pptx
drshailesh88/integrated_content_os
1
Presentation toolkit (.pptx). Create/edit slides, layouts, content, speaker notes, comments, for programmatic presentation creation and modification.
docx
drshailesh88/integrated_content_os
1
Document toolkit (.docx). Create/edit documents, tracked changes, comments, formatting preservation, text extraction, for professional document processing.
peer-review
drshailesh88/integrated_content_os
1
Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.
matchms
drshailesh88/integrated_content_os
1
Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.
opentrons-integration
drshailesh88/integrated_content_os
1
Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows.
academic-chapter-writer
drshailesh88/integrated_content_os
1
Comprehensive academic textbook chapter writing system for medical/scientific content. Use when the user wants to: (1) Write a full textbook chapter (5,000-15,000 words) on any medical/scientific topic, (2) Generate a detailed table of contents with section word counts, (3) Research topics via PubMed MCP and compile 20-30 references, (4) Write section-by-section with proper citations in Vancouver format, (5) Create publishable academic content with Eric Topol-inspired voice and authentic human prose, (6) Get approval at TOC stage before writing begins, (7) Export well-structured chapters for textbook publication.
browser-automation
drshailesh88/integrated_content_os
1
Browser automation for ChatGPT Plus and Gemini Advanced web interfaces. Uses Playwright MCP to interact with your paid subscriptions without API costs. Supports both models for writing comparison.
content-marketing-social-listening
drshailesh88/integrated_content_os
1
Comprehensive content marketing toolkit for discovering viral content opportunities, social listening, knowledge gap analysis, and content demand assessment across platforms. Use when researching trending topics in a niche, finding what's going viral, assessing content knowledge gaps, planning content calendars, or identifying high-demand content opportunities. Integrates with perplexity-search for real-time trend data and research-lookup for deep analysis.
cardiology-trial-editorial
drshailesh88/integrated_content_os
1
Identify landmark cardiology trials and write evidence-based editorials in Eric Topol's authoritative Ground Truths style. Use when the user wants to: (1) Discover and evaluate recent important trials from top cardiology journals (NEJM, JACC, Lancet, EHJ, Circulation), (2) Assess trial importance using systematic scoring, (3) Write 500-word editorials on cardiology/interventional cardiology advances for physician audiences, (4) Create thought leadership content that demonstrates deep domain expertise. Supports both full-text and abstract-only scenarios with PubMed integration for references.
cardiology-youtube-scriptwriter
drshailesh88/integrated_content_os
1
End-to-end YouTube content creation for cardiology channels. Use when user wants to create YouTube videos about cardiology, heart health, or cardiovascular topics. Triggers on greetings with content intent, requests for video ideas or scripts, help with cardiology YouTube channels, heart health video content requests, or any cardiology content creation conversation. Handles complete workflow from ideation through social listening, topic selection, and full script delivery.
datamol
drshailesh88/integrated_content_os
1
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
fda-database
drshailesh88/integrated_content_os
1
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
torchdrug
drshailesh88/integrated_content_os
1
Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosynthesis, GNNs (GIN, GAT, SchNet), 40+ datasets, for PyTorch-based ML on molecules, proteins, and biomedical graphs.
gwas-database
drshailesh88/integrated_content_os
1
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.
ensemble-content-scorer
drshailesh88/integrated_content_os
1
Multi-model consensus scoring for content ideas. Scores the same idea with Claude, GPT-4o, Gemini, and Grok in parallel, then aggregates for a balanced verdict. Reduces single-model bias and improves viral predictions.
gemini-imagegen
drshailesh88/integrated_content_os
1
Generate and edit images using the Gemini API (Nano Banana Pro). Use this skill when creating images from text prompts, editing existing images, applying style transfers, generating logos with text, creating stickers, product mockups, or any image generation/manipulation task. Supports text-to-image, image editing, multi-turn refinement, and composition from multiple reference images.
medical-newsletter-writer
drshailesh88/integrated_content_os
1
Create evidence-based medical newsletters for interventional cardiologists in Eric Topol's authoritative Ground Truths style. Use when the user wants to analyze trending medical topics with engagement predictions, conduct data-driven topic selection, research medical literature using PubMed, or write comprehensive well-referenced newsletters that build professional authority. Handles complete workflow from trend analysis to final draft.